GUILDify v2.0 Web Server - Downloads
Protein-protein interaction networks
The information about the protein-protein interaction networks used by GUILDify can be found in the following table. The BIANA networks Homo sapiens and Mus musculus have been filtered by interactions reported more reliable methods (see Supplementary material of the article). The full networks without filtering can be downloaded as well below.
| Species | Tax. ID | Source | Num. nodes | Num. interactions | Download node information | Download interactions (BIANA ID) | Download interactions (Entrez Gene ID) |
|---|---|---|---|---|---|---|---|
| Arabidopsis thaliana | 3702 | BIANA | 6,204 | 25,525 | Download | Download | Download |
| Caenorhabditis elegans | 6239 | BIANA | 1,239 | 2,191 | Download | Download | Download |
| Drosophila melanogaster | 7227 | BIANA | 2,104 | 18,031 | Download | Download | Download |
| Homo sapiens | 9606 | BIANA | 13,090 | 320,337 | Download | Download | Download |
| Homo sapiens | 9606 | ConsensusPathDB | 15,871 | 258,272 | Download | Download | Download |
| Homo sapiens | 9606 | HIPPIE | 11,911 | 59,121 | Download | Download | Download |
| Homo sapiens | 9606 | I2D | 16,107 | 280,121 | Download | Download | Download |
| Homo sapiens | 9606 | InBio_Map | 13,786 | 113,021 | Download | Download | Download |
| Homo sapiens | 9606 | STRING | 13,380 | 293,413 | Download | Download | Download |
| Mus musculus | 10090 | BIANA | 6,957 | 278,570 | Download | Download | Download |
| Mus musculus | 10090 | ConsensusPathDB | 5,127 | 12,724 | Download | Download | Download |
| Mus musculus | 10090 | I2D | 13,568 | 224,675 | Download | Download | Download |
| Rattus norvegicus | 10116 | BIANA | 892 | 11,943 | Download | Download | Download |
| Saccharomyces cerevisiae | 4932 | BIANA | 5,503 | 96,920 | Download | Download | Download |
| Saccharomyces cerevisiae | 4932 | ConsensusPathDB | 5,486 | 89,161 | Download | Download | Download |
| Saccharomyces cerevisiae | 4932 | I2D | 5,764 | 329,072 | Download | Download | Download |
BIANA protein-protein interaction networks without filtering
| Species | Tax. ID | Source | Num. nodes | Num. interactions | Download node information | Download interactions (BIANA ID) | Download interactions (Entrez Gene ID) |
|---|---|---|---|---|---|---|---|
| Homo sapiens | 9606 | BIANA | 30,416 | 4,107,180 | Download | Download | Download |
| Mus musculus | 10090 | BIANA | 13,120 | 4,771,526 | Download | Download | Download |