Profiles and PWMs for structures of Human CTCF

The model of the DNA binding domain of Human CTCF is constructed by superimposition of the structures 5T0U (zinc-finger domains 2-7) and 5YEL (zinc-finger domains 6-11).

Here are shown the DNA binding profiles of theoretical PWMs of different partial structures of Human CTCF. Structures are also shown.

Select the structure and the finger domain used to construct the statistical potentials and the PWM (forward and reverse orientation of the PWMs is also selected).

The PWM in MEME format can be downloaded.

Template:

Model 5k5h 5k5i 5k5j 5kkq 5t00 5t0u 5und 5yeg 5yeh 5yel

Statistical Potential:

ZES3DCF2 ZES3DCF3

Orientation:

Forward Reverse

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